A toolkit for single cell sequencing analysis

View the Project on GitHub ChenMengjie/Citrus

Welcome to Citrus Pages.

Citrus is a toolkit for single cell sequencing analysis under development. Citrus is written in c++ with easy-to-use R wrappers. To use Citrus, the installation of Rcpp and RcppArmadillo is required.

Available methods

Now a normalized method and a clustering method are available in the distributed version.

Why do we call it citrus?

Citrus is not a short name for any of our methods. To honor Bowtie/Cufflinks and Salmon/Sailfish series, we are creating a fruit collection.


Mengjie Chen (UNC)

Xiang Zhou (Umich)

Bug report, comments or questions please send to